The National Archive of Indonesia published on her website tables of contents of the so-called Daghregisters (Daily accounts) of the Castle Batavia, HR no. 2495. Unfortunately they are in Dutch. In those tables you can find for instance information about the ships arriving at and departing from Batavia (nowadays Djakarta ). I extracted the movements of the ships and vessels owned by the E.I.C. The dates mentioned below in the text are the register dates. See also on this weblog the notes dealing with cargo capacities and individual ships.
Bantam, chialoup, laid up 24 August 1683, hull sold for 49 rijksdaalders 28 August 1683
Beemster, fluyt, departed Batavia towards Cheribon 21 August 1683
Berckmeer, ship, departed Batavia towards Ceylon , Bengal and Malabaar 28 August 1683
Bode, hooker, arrived at Batavia coming from Cheribon and Indermaijoe 7 August 1683
Craanvogel, small yacht, arrived at Batavia coming from the Duijsent eilanden 12 August 1683
Delffshaven, fluyt, departed Batavia towards Cheribon 21 August 1683
Draackensteijn, ship, departed Batavia towards Ceylon , Bengal and Malabaar 28 August 1683
Egelenburgh, ship, departed Batavia towards Ceylon , Bengal and Malabaar 28 August 1683
Ga[a]sperdam, small yacht, chamber Amsterdam , arrived at Batavia coming via Cape of Good Hope from the Netherlands 13 August 1683
Hendrick Maurits, ship, destined to be homeward bound via Ceylon 10 August 1683
Hoop, small yacht, arrived at Batavia coming from the Duijsent eilanden 4 August 1683
't Huijs te Merwerde, ship, departed Batavia towards Rembang 28 August 1683
Lant van Schouwen, destined to be homeward bound via Ceylon 10 August 1683
Lieffde, chialoup, laid up 24 August 1683 , hull sold for 15 rijksdaalders 28 August 1683
Maccasser, ship, arrived at Batavia coming from Banda 23 August 1683
Naardermeer, ship, departed Batavia towards Bengal 27 August 1683
Nederhorst, ship, departed Batavia towards Bengal 27 August 1683
Nieuw Middelburg, ship, arrived at Batavia coming from the East Coast of Java 1 August 683
Oostenburgh, ship, destined to be homeward bound 10 August 1683
Salm, chialoup, arrived at Batavia coming from the Duijsent eilanden 12 August 1683
Smith, small yacht, arrived at Batavia coming from the Duijsent eilanden 12 August 1683
Snauw, small yacht, arrived at Batavia coming from the Duijsent eilanden 12 August 1683
Sparrewoude, ship, departed Batavia towards Bengal 27 August 1683
Suijtbevelant, ship, departed Batavia towards Bengal 27 August 1683
Tijger, commanded by Jacob Vosch 5 August 1683, still mentioned as being off Craoangh 22, 27 en 30 August 1683
Vrije Zee, ship, destined to be homeward bound 10 August 1683 , departed towards the coast of Coromandel 15 August 1683
Zijp, ship, departed towards the coast of