The National Archive of Indonesia published on her website tables of contents of the so-called Daghregisters (Daily accounts) of the Castle Batavia, HR no. 2506. Unfortunately they are in Dutch. In those tables you can find for instance information about the ships arriving at and departing from Batavia (nowadays Djakarta ). I extracted the movements of the ships and vessels owned by the E.I.C. The dates mentioned below in the text are the register dates. See also on this weblog the notes dealing with cargo capacities and individual ships.
At Rembang was a new sloop ('sloep') built 6 September 1690
Adrichem, fluyt, departed Batavia towards Persia 29 September 1690
Aep, pantjalang, arrived at Batavia coming from Tanjongpoura 12 september 1690
Baaren, small fluyt, destined towards Ceylon for transporting advises 1 September 1690 , arrived at Batavia coming from Bantam with a cargo of 486½ bharen pepper 2 September 1690
Belois, fluyt, arrived at Batavia coming from the Netherlands 28 September 1690
Blauwenhulk, ship, arrived at Batavia coming from Japara with a cargo of wood 9 September 1690 , departed Batavia towards Japara 27 September 1690
Bronste, small fluyt, arrived at Batavia coming from Ternate 24 september 1690
Cheribon, chialoup, arrived at Batavia coming from Bantam 5 September 1690, departed Batavia towards Bantam 21 September 1690
Duijff, small boat, destined towards the West Coast of Sumatra within one or two weeks 1 September 1690 , departed Batavia towards the west Coast of Sumatra 20 September 1690
Hengelaar, chialoup, departed Batavia towards the Sunda Strait 27 September 1690
Houtsnip, chialoup, departed Batavia towards Bantam 1 September 1690, arrived at Batavia coming from the Banca Strait where she was patrolling for Palimbangse and Chinese pepper smugglers 3 September 1690
Lelij, pantjalang, arrived at Batavia coming via Cheribon from Japara 30 September 1690
Lijster, hooker, destined towards Soerabaja for patrolling 1 September 1690
Sint Nicolaes, small yacht, mentioned 11 September 1690
Sparwou[de], fluyt, departed Batavia towards Tagal for a cargo of wood 15 September 1690
Valk, pantjalang, arrived at Batavia coming via Cheribon from Japara 30 September 1690
Voetboog, fluyt, arrived at Batavia coming from Coromandel 28 September 1690
Vogelstruijs, pantjalang, departed Batavia towards Cheribon 6 September 1690
Vrijheijt, ship, arrived at Batavia coming from Indermaijoe with a cargo of woodwork 4 September 1690 , departed Batavia towards Cheribon 19 September 1690