The National Archive of Indonesia published on her website tables of contents of the so-called Daghregisters (Daily accounts) of the Castle Batavia, HR no.'s 2496-2497. Unfortunately they are in Dutch. In those tables you can find for instance information about the ships arriving at and departing from Batavia (nowadays Djakarta). I extracted the movements of the ships and vessels owned by the E.I.C. The dates mentioned below in the text are the register dates. See also on this weblog the notes dealing with cargo capacities and individual ships.
America, ship, arrived at Batavia coming from Amboina with a cargo of pepper valued ƒ 90400, 27 August 1684
Bode, hooker, arrived at Batavia coming from the West Coast of Sumatra 20 August 1684
Casteel Rotterdam, small yacht, arrived at Batavia coming from Japara 16 August 1684
Coevorden, ship, destined towards the Netherlands 2 August 1684, destined for chamber Zealand 29 August 1684
Courtgene, ship, destined towards the Netherlands 2 August 1684
Faam, yacht, also called small ship, chamber Amsterdam, arrived at Batavia coming via Cape of Good Hope from the Netherlands 7 August 1684, cargo valued ƒ 145827:18:00, 156 men, 7 August 1684, departed Batavia towards Bengal 31 August 1684
Gecroonde Vreede, ship, hull sold for 920 rijksdaalders 19 August 1684
Hollandsen Thuijn, ship, arrived at Batavia coming from Amboina and Banda 12 August 1684
Hoogergeest, yacht, arrived at Padang with 108 slaves 20 August 1684, mentioned at being at Mallabaar and Ceylon 28 August 1684
Huijs te Cleef, yacht, departed Batavia towards Palembang, cargo valued ƒ 133581:18:15, 29 August 1684
Huijs te Merwede, ship, departed Batavia towards Japara, cargo valued ƒ 71375:04:02 5 August 1684
Juffrouw, Anna, yacht, hired, departed Batavia towards Coromandel and from there to the Netherlands with a cargo for the coast valued ƒ 189909:00:08 with a under layer cargo valued ƒ 46088:16:05, 5 August 1684
Krijgsman, fluyt, chamber Zealand, arrived at Batavia coming via Cape of Good Hope from the Netherlands, cargo valued ƒ 24433:19:03, 160 men, 21 August 1684
Land van Schouwen, ship, destined towards the Netherlands 28 August 1684
Langewijk, fluyt,chamber Enkhuizen, arrived at Batavia coming via Cape of Good Hope from the Netherlands, cargo valued ƒ 95631 for chamber Enkhuizen, cargo valued for chamber Hoorn ƒ 17000, 85 men, 21 August 1684
Macassar, ship, arrived at Batavia coming from the Sint Nicolaes Baij, called warship 9 August 1684
Nieuw Middelburgh, ship, arrived at Batavia coming from Sint Nicolaes Baij 4 August 1684
Pallaceatta, small yacht, arrived at Batavia coming from Japara with 10 Dutch and 21 Inland soldiers, two new chiampans and a cargo valued ƒ 193895, 13 August 1685
Piesang, chialoup, arrived at Batavia coming from Sunda Strait 4 August 1684
Pijl, hull sold for 380 rijksdaalders 19 August 1684
Post, small fluyt, also called small ship, chamber Amsterdam, arrived at Batavia coming via Cape of Good Hope from the Netherlands, cargo valued ƒ 136658:12:00, 201 men, 5 August 1684, departed Batavia towards Bengal 31 August 1684
Poulerun, yacht, arrived at Batavia coming via Bantam from the Sint Nicolaes Baij while serving as war yacht 11 August 1684
Princelant, fluyt, arrived at Batavia coming via Ceylon from Suratte 28 August 1684
Princesse Maria, ship, destined towards the Netherlands 2 August 1684
Romeijn, yacht, hired, departed Batavia via Bengal towards the Netherlands with a cargo valued ƒ 74493 and a under layer valued ƒ 35546 17 August 1684
Silversteijn, ship, destined towards the Netherlands 2 August 1684
Soestdijk, fluyt, laid up 29 August 1684
Veluwe, ship, hull sold for 880 rijksdaalders 19 August 1684
Voorhout, yacht, arrived at Batavia coming from the Sint Nicolaes Baij 10 August 1684
Vrijheijt, ship, destined towards the Netherlands 2 August 1684
Wapen van Middelburg, ship, arrived at Batavia with a cargo of pepper valued ƒ 27759, 18 August 1684
Wapen van Tertholen, yacht, departed Batavia towards the Coast of Coromandel with a cargo valued ƒ 225239:12:05, 10 August 1684
Wapen van Zirckzee, ship, departed Batavia towards Bantam 12 August 1684, arrived at Batavia coming from Bantam with 152 Inland soldiers 18 August 1684
Willem Hendrik, ship, destined towards the Netherlands 28 August 1684
't Wout, small hookerboat, departed Batavia towards Ceylon and Mallabaar 31 August 1684
Zeijst, yacht, departed Batavia towards Suratte, cargo valued ƒ 32446:12:06 30 August 1684
Zilversteijn, ship, destined for chamber Amsterdam 29 August 1684
Zuijdbevelant, yacht, departed Batavia towards the coast of Coromandel with a cargo valued ƒ 156083, 17 August 1684