The National Archive of Indonesia published on her website tables of contents of the so-called Daghregisters (Daily accounts) of the Castle Batavia, HR no.2518. Unfortunately they are in Dutch. In those tables you can find for instance information about the ships arriving at and departing from Batavia (nowadays Djakarta). I extracted the movements of the ships and vessels owned by the E.I.C. The dates mentioned below in the text are the register dates. See also on this weblog the notes dealing with cargo capacities and individual ships.
Boor, small fluyt, departed Batavia towards the Netherlands 22 February 1698
Carthago, ship, ordered to depart towards the Netherlands 6 February 1698, crew engaged 10 February 1698, departed Batavia towards the Netherlands 11 February 1698
Coningvisch, pantjalang, arrived at Batavia coming from Japara 23 February 1698
Eemland, yacht, arrived at Batavia coming via Palembang from Malacca 17 February 1698
Gent, ship, ordered to depart towards the Netherlands 6 February 1698, crew engaged 10 February 1698, departed Batavia towards the Netherlands 11 February 1698
Haas, small fluyt, destined via Macassar towards Banda 14 February 1698
Hoen, galliot, arrived at Batavia coming via Mallabaar and Ceylon [Sri Lanka] from Souratta 3 February 1698
Padang, chialoup, arrived at Batavia coming from Malacca 9 February 1698
Peperthuijn, yacht, arrived at Batavia coming from Palembang with a cargo of pepper 27 february 1698
Pruijm, galliot, arrived at Batavia coming from Bengal 5 February 1698
Reijgersdaal, ship, decided to fit her out as a homeward bound ship 13 February 1698
Sandloper, small fluyt, departed Batavia towards the Netherlands 22 February 1698
Schelde, yacht, departed Batavia via Macassar to bring there 30 soldiers towards Ternate to bring there 80 soldiers 17 February 1698
Sint Anthonij, chialoup, mentioned as not yet arrived at Batavia 5 February 1698, arrived at Batavia coming from Bengal 25 February 1698
Snobber, galliot, destined towards Cheribon for a cargo of wood 25 February 1698
Susanna, yacht, destined towards Cheribon for a cargo of wood 25 February 1698
Vogelstruijs, pantjalang, arrived at Batavia coming from Cheribon 24 February 1698
Voorschoten, fluyt, destined towards Cheribon for a cargo of wood 25 February 1698
Wesel, galliot, arrived at Batavia coming from Cheribon 18 February 1698
Boor, small fluyt, departed Batavia towards the Netherlands 22 February 1698
Carthago, ship, ordered to depart towards the Netherlands 6 February 1698, crew engaged 10 February 1698, departed Batavia towards the Netherlands 11 February 1698
Coningvisch, pantjalang, arrived at Batavia coming from Japara 23 February 1698
Eemland, yacht, arrived at Batavia coming via Palembang from Malacca 17 February 1698
Gent, ship, ordered to depart towards the Netherlands 6 February 1698, crew engaged 10 February 1698, departed Batavia towards the Netherlands 11 February 1698
Haas, small fluyt, destined via Macassar towards Banda 14 February 1698
Hoen, galliot, arrived at Batavia coming via Mallabaar and Ceylon [Sri Lanka] from Souratta 3 February 1698
Padang, chialoup, arrived at Batavia coming from Malacca 9 February 1698
Peperthuijn, yacht, arrived at Batavia coming from Palembang with a cargo of pepper 27 february 1698
Pruijm, galliot, arrived at Batavia coming from Bengal 5 February 1698
Reijgersdaal, ship, decided to fit her out as a homeward bound ship 13 February 1698
Sandloper, small fluyt, departed Batavia towards the Netherlands 22 February 1698
Schelde, yacht, departed Batavia via Macassar to bring there 30 soldiers towards Ternate to bring there 80 soldiers 17 February 1698
Sint Anthonij, chialoup, mentioned as not yet arrived at Batavia 5 February 1698, arrived at Batavia coming from Bengal 25 February 1698
Snobber, galliot, destined towards Cheribon for a cargo of wood 25 February 1698
Susanna, yacht, destined towards Cheribon for a cargo of wood 25 February 1698
Vogelstruijs, pantjalang, arrived at Batavia coming from Cheribon 24 February 1698
Voorschoten, fluyt, destined towards Cheribon for a cargo of wood 25 February 1698
Wesel, galliot, arrived at Batavia coming from Cheribon 18 February 1698