The National Archive of Indonesia published on her website tables of contents of the so-called Daghregisters (Daily accounts) of the Castle Batavia, HR no. 2521. Unfortunately they are in Dutch. In those tables you can find for instance information about the ships arriving at and departing from Batavia (nowadays Djakarta). I extracted the movements of the ships and vessels owned by the E.I.C. The dates mentioned below in the text are the register dates. See also on this weblog the notes dealing with cargo capacities and individual ships.
Assendelft, ship, destined towards Ceylon [Sri Lanka] 11 August 1701, departed Batavia towards Ceylon [Sri Lanka] 16 August 1701
Beverwijck, ship, chamber Amsterdam, arrived at Batavia coming from the Netherlands with a cargo valued ƒ 436.438:11:00 4 August 1701
Bije, small yacht, destined towards Bantam 5 August 1701, departed Batavia towards Bantam with a gift for the king worth ƒ 555:08:00 18 August 1701, arrived at Batavia coming from Bantam with a cargo valued ƒ 17.998:18:08 28 August 1701
Casteel Batavia, chialoup, departed Batavia towards Bantam 23 August 1701, arrived at Batavia coming from Banta, 29 August 1701
Crab, fluyt, departed Ligoor towards Siam [Thailand] with a cargo valued ƒ 786:05:00 15 August 1701
Diemen, fluyt, departed Batavia towards Bengal with a cargo valued ƒ 267.263:13:08 3 August 1701
Etershem, fluyt, arrived at Batavia coming from Japara 4 August 1701
Generale Vreede, ship, destined towards the Netherlands 26 August 1701
Hen, small fluyt, destined towards Bantam 5 August 1701, departed Batavia towards Bantam with a cargo valued ƒ 1.920:12:00 6 August 1701, arrived at Batavia coming from Bantam with a cargo valued ƒ 20.055:07:08 17 August 1701, destined towards the West Coast of Sumatra 26 August 1701
Hengelaer, chialoup, departed Batavia with 2 pantsjalangs towards Cheribon to escort some fishermen 4 August 1701
Huijs te Duijnen, ship, destined towards Ceylon [Sri Lanka] 11 August 1701, departed Batavia towards Ceylon [Sri Lanka] 16 August 1701
IJsselt, fluyt departed Batavia towards the West Coast of Sumatra with a cargo valued ƒ 131.234:0:00 15 August 1701
Langewijk, fluyt, decided to lay her up and to sell her 16 August 1701, publications of her sale approved 22 August 1701, hull sold for 900 rijksdaalders 26 August 1701
Loijaal Kook, British, ship, departed Batavia towards China 10 August 1701
Middelburgh, chialoup, departed Batavia towards Durioens Strait 10 August 1701
Moercappel, yacht, departed Batavia towards Palembang with a cargo valued ƒ 86.700:12:00 10 August 1701
Molenwerf, fluyt, destined towards the Netherlands 5 August 1701
Nederland, ship, arrived at Batavia coming from Bantam with a cargo valued ƒ 99.445:05:00 14 August 1701
Nierop, fluyt, arrived at Batavia coming via Bima with a there loaded cargo valued ƒ 5.296:10:00 from Ternate 6 August 1701
Pampus, yacht, departed Batavia towards Siam [Thailand] with a cargo valued ƒ 30.546:13:00 27 August 1701
Parkiet, pantsjalang, arrived at Batavia coming from Tanjongpoura 5 August 1701
Pool, frigate, destined towards Souratta 11 August 1701, departed Batavia towards Souratta with a cargo valued ƒ 25.975:17:08 16 August 1701
Purmer, yacht, arrived at Batavia coming from Tagal with a letter and a cargo valued ƒ 1.359:00:00 21 August 1701
Robijn, British small ship, departed Batavia towards Madras 15 August 1701
Santo Joan Baptista, small Portuguese ship, arrived at Batavia coming from Madras 24 August 1701
Schelde, yacht, departed Batavia towards Japara 10 August 1701
Schulp, fluyt, departed Batavia towards Cheribon with a cargo valued ƒ 28.004:04:00 17 August 1701
Spiedwel [Speedwell?], Scottish ship, departed Batavia towards China 1 August 1701
Spierdijk, fluyt, chamber Amsterdam, arrived at Batavia coming from the Netherlands with a cargo valued ƒ 204.171:09:00 4 August 1701, departed Batavia towards Japra with a cargo valued ƒ 30.787:09:00 30 August 1701
Susanna, yacht, departed Batavia towards Mallabar with a cargo valued ƒ 21.876:01:08 3 August 1701
Westhoven, ship, tiding of her coming from Coromandel 14 August 1701, arrived at Batavia coming from Coromandel with a cargo valued ƒ 489.840:00:08 16 August 1701
Wind, yacht, departed Batavia towards Palembang 2 August 1701
Woggenum, yacht, departed Batavia towards Palembang with a cargo valued ƒ 11,498:04:08 27 August 1701