Ron van Maanen
The National Archive of Indonesia published on her website tables of contents of the so-called Daghregisters (Daily accounts) of the Castle Batavia, HR no.2518. Unfortunately they are in Dutch. In those tables you can find for instance information about the ships arriving at and departing from Batavia (nowadays Djakarta). I extracted the movements of the ships and vessels owned by the E.I.C. The dates mentioned below in the text are the register dates. See also on this weblog the notes dealing with cargo capacities and individual ships.
Ordered to built excluded the replacement for the wrecked Bonij another 14 vessels for the factory at Macassar 5 August 1698
Andromeda, yacht, departed Batavia towards the West Coast of Sumatra 13 August 1698
Bonij, chialoup, ordered to built a new chialoup for Macassar to replace the wrecked Bonij 5 August 1698
Boswijk, departed Batavia towards Palembang 13 August 1698
Brandenburg, ship, destined towards the Netherlands 15 August 1698
Coning van Bantam, yacht, arrived at Batavia coming from Palembang with a cargo of pepper 4 August 1698
Coninxvisch, pantjalang, arrived at Japara coming from Japara 21 August 1698
Crab, pantjalang, arrived at Batavia returning from the patrolling for pirates to load victuals 23 August 1698
Drechterland, ship, destined towards the Netherlands 15 August 1698
Geregtigheijd, chialoup, arrived at Batavia returning from the patrolling for pirates to load victuals 23 August 1698
Goudesteijn, ship, destined towards Siam [Thailand] 2 August 1698
Hobre, fluyt, departed Batavia towards Siam {Thailand] 30 August 1698
Honsholredijk, sunk at Batavia while coming via Samarang and Tagal from Japara 15 August 1698
Huijs te Craijesteijn, ship, news of her lost 30 August 1698
Itershem, fluyt, departed Batavia towards Bengal 27 August 1698
Java, ship, departed Batavia towards Japara for a cargo of woodwork 5 August 1698
Leeuwerk, galliot, arrived at Batavia returning from the patrolling for pirates to load victuals 23 August 1698
Meijdregt, yacht, departed Batavia towards Bengal 3 August 1698
Nieuwland, fluyt, departed Batavia towards Bengal and destined from there to Ceylon [Sri Lanka] and the Netherlands 14 August 1698
Prinsland, fluyt, destined towards Persia 27 August 1698
Purmer, yacht, destined towards Siam [Thailand] 2 August 1698
Schaapherder, small yacht, arrived at Batavia coming from Japara with the cargo opium of the British small ship Sirian Merchiant 8 August 1698, decided that she was to be escorted by the galliot Wesel towards Princen island 19 August 1698, departed Batavia towards Coromandel with the cargo of opium (86 ‘kassen en canassers’) belonging to the British Sirian Merchant 21 August 1698
Schoonderloo, fluyt, destined towards Persia 27 August 1698
Siriah Merchant, British small ship, decided to send her cargo of opium to Coromandel 15 August 1698
Sirjansland, ship, destined towards Souratta 13 August 1698
Soldaat, small frigate, arrived in Sunda Strait coming from Cape of Good Hope 30 August 1698
Unie, ship, Chamber Amsterdam, arrived at Batavia coming from the Netherlands 4 August 1698, destined towards the Netherlands 15 August 1698
Voetboog, fluyt, arrived at Batavia coming from Cheribon 14 August 1698
Vogelstruijs, pantjalang, arrived at Batavia returning from the patrolling for pirates to load victuals 23 August 1698
Vosmaar, ship, arrived at Batavia coming Coromandel 1 August 1698, destined towards the Netherlands 15 August 1698
Walenburg, fluyt, departed Batavia towards Tagal for a cargo of woodwork 19 August 1698
Wesel, galliot, departed Batavia towards Bantam 7 August 1698, arrived at Batavia coming from Bantam 15 August 1698
Zeeland, ship, arrived at Batavia coming from Ceylon {Sri Lanka] with a cargo including slaves and cardamon 26 August 1698