The National Archive of Indonesia published on her website tables of contents of the so-called Daghregisters (Daily accounts) of the Castle Batavia; HR no.'s 2508-2509. Unfortunately they are in Dutch. In those tables you can find for instance information about the ships arriving at and departing from Batavia (nowadays Djakarta). I extracted the movements of the ships and vessels owned by the E.I.C. The dates mentioned below in the text are the register dates. See also on this weblog the notes dealing with cargo capacities and individual ships.
Berkel, fluyt, chamber Delft, arrived at Batavia coming from the Netherlands, had 12 dead men while underway, cargasoen valued ƒ 92914:08:08 12 March 1692
Brandenburgh, ship, arrived at Batavia coming from Ceylon 12 March 1692
Casteel Batavia, ship, destined towards Japara for woodwork 20 March 1692
Castricum, ship, arrived at Batavia coming from Ceylon 12 March 1692, destined towards Cheribon 28 March 1692
Coeverden, destined towards Tegal for woodwork 26 March 1692
Crab, pantsjalang, destined towards Bantam 13 March 1692
Dregterland, ship, news arrived of the death of the commissary Hendrik Adriaen van Rheede 15 December 1691 while off Bombahia 12 March 1692
Herderin, yacht, destined via Cheribon towards Macassar 7 March 1692
Hoger Geest, yacht, departed Batavia towards the Netherlands with a cargasoen valued ƒ 88996:14:00 and 100 men 6 March 1692
Huijs te Spijk, fluyt, arrived at Batavia coming from Siam 13 March 1692
Jambij, yacht, departed Batavia via Japara and Sourabaya towards Banda 7 March 1692
Keffingh, chialoup, destined via Japara towards Banda 13 March 1692
Leck, ship, mentioned coming from Cape of Good Hope and arrived in the Bay of Dirck de Vries at the South side of Java almost helpless 4 March 1692
Meijdrecht, yacht, departed Bengal via Ceylon towards the Netherlands with a cargaoen valued ƒ 597334:17:06
Middelburgh, chialoup, destined towards Bantam 22 March 1692, arrived at Batavia coming from Bantam 29 March 1692
Moercappel, yacht, chamber Rotterdam, departed Batavia towards the Netherlands 26 March 1692
Purmer, yacht, destined towards Rembang for woodwork 27 March 1692
Schelde, ship, destined towards Bantam 5 March 1692, arrived at Batavia coming from Bantam 16 March 1692
Sion, also called Zion, ship, chamber Hoorn, arrived at Batavia coming from the Netherlands with 172 dead men while underway 19 March 1692
Waveren, fluyt, news arrived that she was burnt while coming from Bengal 10 March 1692, a private chialoup arrived at Batavia with her crew 22 March 1692
Westbroek, small fluyt, arrived at Batavia coming from Bengal 12 March 1692
Wiltschut, small yacht, ordered to the Bay of Dirck de Vries at the South side of Java to assist the Leck 4 March 1692, departed Batavia towards the Bay of Dirck de Vries at the South side of Java to assist the Leck 6 March 1692
Zaamslag, news arrived that she joined the Leck in the Bay of Dirck de Vries at the South side of Java 26 March 1692
Zeijst, yacht, departed Batavia towards Macassar with a cargo valued ƒ 30160:05:08 17 March 1692
