The National Archive of Indonesia published on her website tables of contents of the so-called Daghregisters (Daily accounts) of the Castle Batavia, HR no.'s 2515-2516. Unfortunately they are in Dutch. In those tables you can find for instance information about the ships arriving at and departing from Batavia (nowadays Djakarta). I extracted the movements of the ships and vessels owned by the E.I.C. The dates mentioned below in the text are the register dates. See also on this weblog the notes dealing with cargo capacities and individual ships.
Civilian carpenter Juriaan Abrahamsz departed Batavia via Japara towards Rembang to built there ships for the company 5 December 1696
Aap, pantjalang, departed Batavia towards Tanjongpura 8 December 1696, arrived at Batavia coming from Tanjongpura 23 December 1696
Andromeda, yacht, arrived at Batavia coming from Palembang 2 December 1696
Beurs, yacht, laid up 11 December 1696
Boswijck, small yacht, departed Batavia towards Macassar 29 December 1696
Bovencaspel, fluyt, arrived at Batavia coming from Tagal 6 December 1696
Ceram, chialoup, destined towards Amboyna to serve there (again) 14 December 1696
Civetkat, small fluyt, laid up 11 December 1696
Coning van Bantam, yacht, departed Batavia towards Bantam for a cargo of pepper 3 December 1696
Duijff, small fluyt, laid up 11 December 1696
Geregtigheijt, chialoupe, destined towards Macassar and to serve there 14 December 1696
Hen, yacht, arrived at Batavia coming from Ceylon 3 December 1696, destined to go to the homeward bound ships 28 December 1696
Herderinne, small yacht, departed Batavia towards Ternate 24 December 1696
Jambij, yacht, laid up 11 December 1696
Jerusalem, fluyt, arrived at Batavia coming from Japan 8 December 1696
Kers, galliot, destined to go as an aviso with the homeward bound ships until Cape of Good Hope 28 December 1696
Matroos, small yacht, destined to go to the homeward bound ships to bring the books and papers 28 December 1696
Swaeg, fluyt, arrived at Batavia coming from Mauritius 19 December 1696, destined towards Amboyna 21 December 1696
Swarten Arent, small yacht, arrived at Batavia from Bantam with a cargo of 65 2/3 bharen white pepper and 50 pots whitewash
