The National Archive of Indonesia published on her website tables of contents of the so-called Daghregisters (Daily accounts) of the Castle Batavia; HR no.'s 2508-2509. Unfortunately they are in Dutch. In those tables you can find for instance information about the ships arriving at and departing from Batavia (nowadays Djakarta). I extracted the movements of the ships and vessels owned by the E.I.C. The dates mentioned below in the text are the register dates. See also on this weblog the notes dealing with cargo capacities and individual ships.
Decided to built two new chialoups at Rembang 24 June 1692
Boswijk, yacht, departed Batavia towards Toncquin 14 June 1692
Cadirij, small yacht, destined towards Soerabaja 10 June 1692, departed Batavia via Japara towards Soerabaja 20 June 1692
Coeverden, ship, arrived at Batavia coming with a cargo of woodwork from Tagal 3 June 1692, destined towards Indermaijoe for a cargo of woodwork 19 June 1692
Cronenborgh, fluytship, arrived at Batavia coming with a cargo including cloves from Amboina 19 June 1692
Drakesteijn, small fluyt, departed Batavia via the West Coast towards Bengal 11 June 1692
Egelenburgh, fluyt, arrived at Batavia coming from Bengal 7 June 1692
Gideon, ship, arrived at Batavia coming from Tagale and Indermaijoe with a of cargo woodwork 10 June 1692, destined towards Japara for a cargo of woodwork 28 June 1692
Handboog, destined towards Japan 3 June 1692
Herderin, small yacht, destined towards Bantam with cash money 7 June 1692, arrived at Batavia coming from Bantam 15 June 1692, departed Batavia towards the Banca Strait to patrol for pepper smugglers 19 June 1692
Honsholredijk, ship, arrived at Batavia coming via Ceylon from Persia 7 June 1692
Huis te Spijk, ship, arrived at Batavia coming from Tagale and Indermaijoe with a cargo woodwork 10 June 1692, destined towards Indermaijoe for a cargo of woodwork 23 June 1692
Lelie, pantjalang, due to misunderstanding there had been a fight with a merchant ship instead with a pirate 9 June 1692
Middelburg, chialoup, destined towards Cheribon/Indermaijoe with supplies for the wood floats 7 June 1692
Pampus, destined towards Japan 3 June 1692
Sint Martensdijk, yacht, departed Batavia via Ceylon towards Bengal 21 June 1692
Snaauw, yacht, arrived at Batavia coming from Palembang? 22 June 1692
Walenburg, fluyt, arrived at Batavia coming from Ambon 3 June 1692, destined towards Bengal 10 June 1692
Westbroek, small fluyt, destined via the West Coast towards Bengal 25 June 1692
Zillida also called Sillida, yacht, destined towards Bantam for a cargo pepper 2 June 1692, arrived at Batavia coming with a cargo pepper from Bantam 13 June 1692