The National Archive of Indonesia published on her website tables of contents of the so-called Daghregisters (Daily accounts) of the Castle Batavia, HR no. 2520. Unfortunately they are in Dutch. In those tables you can find for instance information about the ships arriving at and departing from Batavia (nowadays Djakarta). I extracted the movements of the ships and vessels owned by the E.I.C. The dates mentioned below in the text are the register dates. See also on this weblog the notes dealing with cargo capacities and individual ships.
Andromeda, small yacht, destined towards Banda with 25 soldiers and a cargo valued ƒ 31.743:04:08 6 January 1700
Belois, fluyt, arrived at Batavia coming from the Netherlands 27 January 1700
Donkervliet, ship, departed Batavia towards Amboina with 50 soldiers and for ƒ 184.028:18:00 of cash and stores 14 January 1700
Geelvink, homeward bound retour ship mentioned 20 January 1700
Geregtigheijt, chialoup, destined towards Macasar 6 January 1700
Hen, small fluyt, destined towards Cape of Good Hope 21 January 1700
Hobre, fluyt, arrived at Bantavia coming from Bantam 12 January 1700
Hoen, galliot, departed Batavia towards the entrance of Sunda Strait 23 January 1700
‘t Huijs de Bijweg, fluyt, arrived at Batavia 28 January 1700
Langewijck, arrived at Batavia coming from Bengal with a cargo valued ƒ 698.727:09:00 3 January 1700
Larique, chialoup, departed Batavia via Japara towards Ternate 15 January 1700
Nederland, ship, tiding of her arrival coming from the Netherlands in Sunda Strait 25 January 1700
Oosthuijsen, fluyt, departed Batavia towards Ternate 15 January 1700
Oostvoorn, small yacht, destined towards Macassar 6 January 1700
Parkiet, pantjalang, transported from Tanjongpoura 243 lb. indigo 9 January 1700
Peer, galliot, departed Batavia towards Bantam 7 January 1700, arrived at Batavia coming from Bantam with a cargo valued ƒ 247:04:00 14 January 1700
Peperboom, fluyt, arrived at Batavia 28 January 1700
Schulp, ship, arrived at Batavia coming from Bengal with a cargo valued ƒ 275.346:08:00 2 January 1700
Snoeper, galliot, arrived at Batavia coming with letters from the homeward bound ships Merensteijn and Overrijp 16 January 1700
Vegt, homeward bound retour ship mentioned 20 January 1700
Voetboog, homeward bound retour ship mentioned 20 January 1700
Westhoven, ship, destined with 100 soldiers and some craftsmen and a cargo valued ƒ 75.501:18:08 towards Macassar 16 January 1700