The National Archive of Indonesia published on her website tables of contents of the so-called Daghregisters (Daily accounts) of the Castle Batavia; HR no. 2495. Unfortunately they are in Dutch. In those tables you can find for instance information about the ships arriving at and departing from Batavia (nowadays Djakarta). I extracted the movements of the ships and vessels owned by the E.I.C. The dates mentioned below in the text are the register dates. See also on this weblog the notes dealing with cargo capacities and individual ships.
Africa, ship, destined homeward bound for chamber Zealand 2 October 1683
Asia, ship, news of the arrival of the homeward bound from Batavia at Cape of Good Hope 4 October 1683
Baaren, fluyt, arrived at Batavia coming from the Netherlands with a cargo valued ƒ 94006:03:08 4 October 1683
Burg van Leijden, ship, destined homeward bound for chamber Zealand 2 October 1683
China, ship, indicated as a Ceylon homeward bound ship, departed Batavia via Cape of Good Hope towards the Netherlands 4 October 1683
Croonenburgh, ship, indicated as a Ceylon homeward bound ship, departed Batavia via Cape of Good Hope towards the Netherlands 4 October 1683
Gele Beer, fluyt, arrived at Batavia coming via Batchian from Ternate 16 October 1683
Goudestein, ship, news of the arrival of the homeward bound from Batavia at Cape of Good Hope 4 October 1683
Goutvinck, hooker, arrived at Batavia coming from Bantam 7 October 1683
Hendrick Maurits, ship, indicated as a Ceylon homeward bound ship, departed Batavia via Cape of Good Hope towards the Netherlands 4 October 1683
Hollandse Thuijn, ship, chamber Zealand, arrived at Batavia coming via the West Coast of Sumatra from the Netherlands with 293 men, a cargo valued for chamber Zealand ƒ 163240, for chamber Rotterdam ƒ 3420 and chamber Enkhuizen ƒ 52341
Hoogergeest, fluyt, news of the departure from Cape of Good Hope towards Madagascar 4 October 1683
't Huijs te Merwede, ship, arrived at Batavia coming from the East Coast of Java 15 October 1683
Lant van Schouwen, destined to go via Ceylon towards the Netherlands 4 October 1683
Marcken, small fluyt, arrived at Batavia coming from Palembang 28 October 1683
Neptunus, chialoup, departed Batavia towards the West Coast towards Sumatra 8 October 1683
Nieuw Middelburgh, ship, departed Batavia towards the West Coast towards Sumatra 8 October 1683
Onrust, chialoup, arrived at Batavia coming from Macassar 28 October 1683
Paliaccatta, chialoup, arrived at Batavia coming from Tanara 31 October 1683
Schiebroeck, ship, news of the arrival of the homeward bound from Batavia at Cape of Good Hope 4 October 1683
Schielant, ship, news of the arrival of the homeward bound from Batavia at Cape of Good Hope 4 October 1683
Strijen, fluyt, news of the arrival of the homeward bound from Batavia at Cape of Good Hope 4 October 1683
Swanenburgh, fluyt, arrived at Batavia coming from Palembang 17 October 1683
Tijger, frigate, arrived at Batavia coming back from patrolling off Caraoangh 15 October 1683
Voorsigtigheijt, fluyt, arrived at Batavia coming from Bantam 1 October 1683
Willem Hendrick, destined to go via Ceylon towards the Netherlands 4 October 1683
Winthont, chialoup, arrived at Batavia coming from Bantam 28 October 1683